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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27489657_27491602_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27489657 - 27491602
Intron Length:
1946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGACGGCT
5'SS Class:
major
3'SS Sequence:
ATTGTTTTAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTGTTTTAATA
Flanking Amino Acid:
YSLSTAVSGGSRTQNEGHPK
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
66.5
39.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
74
0.54
0.9
70.4
39.5
Minor 5ss
32
-2.1
3.6
47.6
48
Minor BPS
67.2
0.54
1.3
72.5
34

Associated Gene:

Gene:
FKBP7
Ensembl Gene ID:
ENSAPLG00000013044
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013579
27487114 - 27491850
4737