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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27512272_27512356_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27512272 - 27512356
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTTCCCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CTGATCTTAATG
Flanking Amino Acid:
EIEWFKNNQPIAVSSHIRVT
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
83
0.74
0.7
81.2
23.9
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
60.8
0.2
1.5
59.08
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021067
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035404
27510469 - 27514240
3772