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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27517291_27518429_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
27517291 - 27518429
Intron Length:
1139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAAG
5'SS Class:
major
3'SS Sequence:
TGTGATGCACTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
AGGTCTGTGATG
Flanking Amino Acid:
VSGTASLDVEEFLHRHSIGH
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
71.5
39.9
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
56.8
0.15
1.1
48.5
44.6
Minor 5ss
31.7
-2.1
3.1
39.3
46.2
Minor BPS
45.5
-0.5
2
48.41
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021067
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034548
27509057 - 27524336
15280