Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27539286_27539348_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

27539286 - 27539348

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

ATT|GCATGGACT

5'SS Class:

weak_major

3'SS Sequence:

AAAACTGCTGAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTGTAAA

U12 Branch Point Sequence:

CATCCTGTAAAG

Flanking Amino Acid:

IVEKRETSRIGNEYIFRVMG

Intron Amino Acid Position:

596

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.17

1.4

66.7

38.6

Major BPS

62.9

0.32

1.2

65.3

38.6

Major PPT

49.5

-0

1.1

46.1

40.5

Minor 5ss

33.2

-1.9

4.2

43.4

Minor BPS

45.4

-0.4

2.1

50.99

43.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026806

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042441

27536680 - 27541133

4454

ENSAPLT00000037125

27536465 - 27541133

4669