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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27551723_27556457_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
27551723 - 27556457
Intron Length:
4735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAACTGAC
5'SS Class:
weak_major
3'SS Sequence:
AGATGAATGGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTACAT
U12 Branch Point Sequence:
TGAGATTGCACT
Flanking Amino Acid:
DCAFTIVTPPVGLKA
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61
0.26
1.3
60
39.3
Major BPS
65
0.37
1.3
75
40
Major PPT
46.3
-0.2
1.2
39.5
42.3
Minor 5ss
41.4
-1
3.3
61.8
43
Minor BPS
42.1
-0.5
2
59.32
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026806
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020659
27547048 - 27556472
9425