Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27647443_27648311_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27647443 - 27648311

Intron Length:

869

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGACCA

5'SS Class:

strong_major

3'SS Sequence:

TACTATTTTCAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

GTATCTTTATTT

Flanking Amino Acid:

ISIHREEISEVTEEESYYIE

Intron Amino Acid Position:

5473

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

38.3

Major BPS

83.9

0.84

73.9

41.3

Major PPT

70.1

0.45

1.1

67.7

42.2

Minor 5ss

38.3

-1.3

48.9

46.8

Minor BPS

64.5

0.53

1.6

77.38

39.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022613

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048321

27647096 - 27747675

100580

ENSAPLT00000045042

27647096 - 27747675

100580