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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27650895_27651327_R

Intron Information:

Intron Rank:
76
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
27650895 - 27651327
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACTTG
5'SS Class:
weak_major
3'SS Sequence:
TATCTTTTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATATTTTATCT
Flanking Amino Acid:
APREELPPAKVPEVPKRAPP
Intron Amino Acid Position:
5333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
64.7
41.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.5
0.64
1
83.1
31.9
Minor 5ss
60.2
0.34
2.5
72.7
44.5
Minor BPS
60.7
0.42
1.6
77.3
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022613
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045042
27647096 - 27747675
100580
ENSAPLT00000048321
27647096 - 27747675
100580