Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27651409_27651575_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27651409 - 27651575

Intron Length:

167

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAGCAT

5'SS Class:

major

3'SS Sequence:

AATATCTTTAAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATATCTTTAAAG

Flanking Amino Acid:

TRKEVSPPAKVPEVPKIPVP

Intron Amino Acid Position:

5306

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

1.1

63.1

42.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

65.7

0.35

1.1

64.2

40.9

Minor 5ss

30.7

-2.2

3.6

46.8

48.5

Minor BPS

68.1

0.43

1.4

68.14

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022613

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048321

27647096 - 27747675

100580

ENSAPLT00000045042

27647096 - 27747675

100580