Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27652665_27652914_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27652665 - 27652914

Intron Length:

250

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGATAAT

5'SS Class:

major

3'SS Sequence:

ATTCCTATTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

TATCTCCAAATT

Flanking Amino Acid:

RFFEAVYPTEARKEVTEEEE

Intron Amino Acid Position:

5229

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.69

80.3

34.3

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

80.5

0.69

0.8

74.4

34.3

Minor 5ss

35.4

-1.7

3.2

50.1

46.4

Minor BPS

48.6

-0

1.9

70.95

40.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022613

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045042

27647096 - 27747675

100580

ENSAPLT00000048321

27647096 - 27747675

100580