Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27653334_27653899_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27653334 - 27653899

Intron Length:

566

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAGATC

5'SS Class:

major

3'SS Sequence:

CCTATCTTTAAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTAAA

U12 Branch Point Sequence:

CTATCTTTAAAG

Flanking Amino Acid:

IIEEKVMKKEVPTVETWTVS

Intron Amino Acid Position:

5180

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.1

0.54

1.1

70.4

Major BPS

77.5

0.68

0.8

76.2

24.6

Major PPT

70.5

0.46

70.2

34.1

Minor 5ss

35.1

-1.7

3.5

51.2

45.6

Minor BPS

65.6

0.35

1.5

65.31

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022613

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048321

27647096 - 27747675

100580

ENSAPLT00000045042

27647096 - 27747675

100580