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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27656884_27657002_R

Intron Information:

Intron Rank:
65
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27656884 - 27657002
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTAAGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAAGC
Flanking Amino Acid:
LVPTPEEKKPEKKVSVKKVT
Intron Amino Acid Position:
4991

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.7
0.76
0.9
82.5
32.8
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
72.4
0.68
1.5
81.25
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022613
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048321
27647096 - 27747675
100580
ENSAPLT00000045042
27647096 - 27747675
100580