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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27660498_27660579_R

Intron Information:

Intron Rank:
58
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27660498 - 27660579
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTTAT
5'SS Class:
strong_major
3'SS Sequence:
TAATATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTAAATTAATA
Flanking Amino Acid:
FIQQRLSQTEPITLVRDIEN
Intron Amino Acid Position:
4675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1.1
84
30.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
80.6
0.69
0.9
77.6
40.8
Minor 5ss
47.4
-0.3
2.7
66.9
44.4
Minor BPS
59.4
0.29
1.8
74.76
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022613
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045042
27647096 - 27747675
100580
ENSAPLT00000048321
27647096 - 27747675
100580