About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27661944_27663017_R

Intron Information:

Intron Rank:
54
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27661944 - 27663017
Intron Length:
1074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
TTATTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTACTTATTT
Flanking Amino Acid:
DTCRSKVTVKEKTTAAPAAK
Intron Amino Acid Position:
4458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.3
0.75
0.8
82.5
33.6
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
69.6
0.69
1.7
89
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022613
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048321
27647096 - 27747675
100580
ENSAPLT00000045042
27647096 - 27747675
100580