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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27679636_27679746_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27679636 - 27679746
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGATT
5'SS Class:
major
3'SS Sequence:
TGTTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATCCTTCACT
Flanking Amino Acid:
ASTKALLTVQERKRPPSFAR
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
80.5
33.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.9
0.88
0.7
81.2
36.5
Minor 5ss
32.8
-2
3.3
48.4
47.4
Minor BPS
78.4
0.98
1.7
93.01
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017682
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018926
27676096 - 27680618
4523