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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27680026_27680131_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27680026 - 27680131
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGTGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
GCCTTTCTAATT
Flanking Amino Acid:
DVCEAVVSTLEPPYFVTHLE
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.6
31.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
85.3
0.8
0.6
84.4
23.5
Minor 5ss
36
-1.6
3.2
49.9
46.5
Minor BPS
50.2
0.09
1.6
64.06
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017682
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029616
27676520 - 27681209
4690