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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27708133_27712417_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27708133 - 27712417
Intron Length:
4285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTGT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TTTAGCTCAAAA
Flanking Amino Acid:
VTSTATLKLEAPEKIIHEKL
Intron Amino Acid Position:
3212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
63.9
42.9
Major BPS
54
0.1
1
59.7
32.6
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
36.7
-1.5
3.6
56
48.2
Minor BPS
50
-0
2.1
70.07
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022613
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045042
27647096 - 27747675
100580
ENSAPLT00000048321
27647096 - 27747675
100580