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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27716467_27716552_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27716467 - 27716552
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGCT
5'SS Class:
major
3'SS Sequence:
CACCTTTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTCTATTCCACC
Flanking Amino Acid:
AASSATLYVEARHIEFRKHI
Intron Amino Acid Position:
2832

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
73.4
35.4
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
73.7
0.53
0.8
67.7
32
Minor 5ss
41.5
-0.9
3.1
59.5
45
Minor BPS
46.7
-0.2
2.1
63.11
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022613
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048321
27647096 - 27747675
100580
ENSAPLT00000045042
27647096 - 27747675
100580