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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27718294_27718766_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27718294 - 27718766
Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTTTATCAATA
Flanking Amino Acid:
SKTSAKLKVEAVKIKKTLKN
Intron Amino Acid Position:
2483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1.2
90.9
28.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.9
0.78
0.8
77.5
36.2
Minor 5ss
37.1
-1.5
2.8
51.6
44.9
Minor BPS
53.9
0.12
1.8
68.17
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022613
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048321
27647096 - 27747675
100580
ENSAPLT00000045042
27647096 - 27747675
100580