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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27724441_27725148_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27724441 - 27725148
Intron Length:
708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTACA
5'SS Class:
strong_major
3'SS Sequence:
CGTATCCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCGTAT
U12 Branch Point Sequence:
ATTGCCATATCT
Flanking Amino Acid:
MPGPEIMRRYRSISPRSPSR
Intron Amino Acid Position:
1197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.7
33.8
Major BPS
66.5
0.41
1.4
65.7
43.2
Major PPT
76
0.58
0.9
65.8
40.8
Minor 5ss
34.6
-1.7
2.9
43
44
Minor BPS
55.8
0.26
2
79.43
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022613
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045042
27647096 - 27747675
100580
ENSAPLT00000048321
27647096 - 27747675
100580