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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27731343_27732419_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27731343 - 27732419
Intron Length:
1077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TTTTCTTCTATT
Flanking Amino Acid:
AVPKPDHTYEVSIAGSAMAT
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
81.6
0.71
0.7
77.5
30.9
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
61.5
0.44
1.8
83.99
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022613
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048321
27647096 - 27747675
100580
ENSAPLT00000045042
27647096 - 27747675
100580