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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27735402_27736178_R

Intron Information:

Intron Rank:
8
Intron Class:
major_hybrid
Intron Phase:
0
Intron Coordinates:
27735402 - 27736178
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCATAAAAACTAG|A
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTTCTTTACCA
Flanking Amino Acid:
HEQVHIAHEKIRKEDVKPSV
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
48.8
-0
1
38.5
37.5
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
77.3
0.85
1.5
86.93
31.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022613
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045042
27647096 - 27747675
100580