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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27737436_27737898_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
27737436 - 27737898
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAGTA
5'SS Class:
major
3'SS Sequence:
CTACAAAAATCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
TTGTCTGTTACT
Flanking Amino Acid:
AVHVQAVQEQMRKEATVVLT
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
68.5
36.7
Major BPS
60.3
0.26
1
65.5
28
Major PPT
53.1
0.07
1.1
49.8
41.6
Minor 5ss
32
-2.1
3.8
46.4
48.9
Minor BPS
53.2
0.18
2.3
79.44
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022613
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048321
27647096 - 27747675
100580