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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27738052_27738272_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
27738052 - 27738272
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTCT
5'SS Class:
strong_major
3'SS Sequence:
GTGACTAATTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTCTTTTGATG
Flanking Amino Acid:
AGEVATGAKEVRKDSEKTAA
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.5
34.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
59.8
0.22
1
56.4
43.5
Minor 5ss
38.7
-1.3
3.4
56.7
47.6
Minor BPS
56.5
0.06
1.3
59.68
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022613
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048321
27647096 - 27747675
100580