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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27745283_27747378_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
27745283 - 27747378
Intron Length:
2096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TGATATCTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1.1
82.6
29.9
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
83.9
0.76
0.9
81.2
36.5
Minor 5ss
32.4
-2
2.5
37
40.2
Minor BPS
51.4
0.12
1.8
71.51
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022613
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045042
27647096 - 27747675
100580
ENSAPLT00000048321
27647096 - 27747675
100580