About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27776259_27777819_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27776259 - 27777819
Intron Length:
1561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTAGTA
5'SS Class:
major
3'SS Sequence:
CAATCTACTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TCCTTCTCAATC
Flanking Amino Acid:
MEQLQQIMEECQFCFEDVSA
Intron Amino Acid Position:
1016

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
68.2
37
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
67
0.38
0.9
63.7
37.5
Minor 5ss
33
-1.9
3.6
47.5
47.9
Minor BPS
60.4
0.31
1.5
65.51
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017075
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026750
27765553 - 27832034
66482