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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27778003_27779201_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27778003 - 27779201
Intron Length:
1199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACTA
5'SS Class:
strong_major
3'SS Sequence:
CATCTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
ACATCTTTAAAC
Flanking Amino Acid:
QVDTYADKIQVLKKKMDNLE
Intron Amino Acid Position:
955

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
73.6
37
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
69.9
0.45
1
66
38.5
Minor 5ss
35.6
-1.6
3.2
48.3
47.2
Minor BPS
65.6
0.47
1.4
66.84
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017075
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026750
27765553 - 27832034
66482