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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27785866_27786943_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27785866 - 27786943
Intron Length:
1078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TGTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATGCCCTGAATT
Flanking Amino Acid:
VDILSAVQQTNCLNVSVKNL
Intron Amino Acid Position:
858

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
72.6
33.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
90.2
0.9
0.7
88.4
28.7
Minor 5ss
32.5
-2
2.8
43.1
43.9
Minor BPS
65.3
0.56
1.4
77.11
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017075
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026750
27765553 - 27832034
66482