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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27793157_27795417_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
27793157 - 27795417
Intron Length:
2261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TATGCCCTAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TATGCCCTAAAA
Flanking Amino Acid:
EHLELANQIKEASHELEAAN
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
57.7
0.17
1.1
57.6
37.4
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
56.7
0.21
1.9
70.98
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017075
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026750
27765553 - 27832034
66482