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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27815607_27815898_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27815607 - 27815898
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAACA
5'SS Class:
major
3'SS Sequence:
TCTTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CTTTTCTTACAG
Flanking Amino Acid:
LLLQQEHHTKELLEKSLTLL
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
67.9
37.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
92.4
0.95
0.6
87.6
22.8
Minor 5ss
32
-2.1
3.1
41.5
44.6
Minor BPS
56.2
0.06
1.8
63.72
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017075
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026750
27765553 - 27832034
66482