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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27816008_27818356_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27816008 - 27818356
Intron Length:
2349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTTTT
5'SS Class:
major
3'SS Sequence:
TTTCCTAATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
GTTTTCCTAATG
Flanking Amino Acid:
TSVFFENALEFAVKIDQVED
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
81.7
32.3
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
79.4
0.66
0.9
74.6
33.8
Minor 5ss
48.6
-0.1
2.4
67.6
43.4
Minor BPS
61.7
0.23
1.7
68.49
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017075
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026750
27765553 - 27832034
66482