About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27824_31828_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27824 - 31828
Intron Length:
4005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
CCTGTAACTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCCTGTAACT
Flanking Amino Acid:
VHDEETFRYMTLFQLPPSSF
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
76.9
33.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
66.5
0.37
0.9
59.6
35.7
Minor 5ss
35.1
-1.7
2.8
38.8
40.3
Minor BPS
67.3
0.62
2
89.23
35.4

Associated Gene:

Gene:
TRAK2
Ensembl Gene ID:
ENSAPLG00000014773
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015441
26351 - 43887
17537