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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27824_32426_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27824 - 32426
Intron Length:
4603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTATTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ACTTCAGTAAGT
Flanking Amino Acid:
VHDEETFRYMILGTDNMEQK
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
76.9
33.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.3
0.89
0.7
88.4
28.3
Minor 5ss
35.1
-1.7
2.8
38.8
40.3
Minor BPS
47
-0.1
2.4
71.16
45.6

Associated Gene:

Gene:
TRAK2
Ensembl Gene ID:
ENSAPLG00000014773
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042096
26351 - 43961
17611