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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27847113_27848282_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27847113 - 27848282
Intron Length:
1170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATTA
Flanking Amino Acid:
AVAFHSSAEKILQECPEQPE
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.1
0.97
0.7
88.7
26.7
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
62
0.37
1.5
71.06
35.7

Associated Gene:

Gene:
SESTD1
Ensembl Gene ID:
ENSAPLG00000002954
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003026
27844544 - 27885803
41260