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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27848475_27849847_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27848475 - 27849847
Intron Length:
1373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGA
5'SS Class:
strong_major
3'SS Sequence:
CTCCAACTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTCCTCCAACT
Flanking Amino Acid:
KHRKFVDVAQSTYDYGRQLL
Intron Amino Acid Position:
549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
71.1
35.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
70
0.45
0.8
66.2
34.4
Minor 5ss
36.7
-1.5
3.1
47.8
47.6
Minor BPS
52.1
0.15
1.9
75.74
40.4

Associated Gene:

Gene:
SESTD1
Ensembl Gene ID:
ENSAPLG00000002954
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003026
27844544 - 27885803
41260