About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27854501_27855624_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27854501 - 27855624
Intron Length:
1124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTTTTTTACTT
Flanking Amino Acid:
KLLEEKLKSVDLGLQGLREK
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
79.8
35.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
92.8
0.96
0.5
93.3
15.6
Minor 5ss
43.1
-0.8
2.9
54.5
43.9
Minor BPS
64.2
0.52
1.5
79.54
37.3

Associated Gene:

Gene:
SESTD1
Ensembl Gene ID:
ENSAPLG00000002954
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003026
27844544 - 27885803
41260