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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27855740_27856493_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27855740 - 27856493
Intron Length:
754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTTTTAAAC
Flanking Amino Acid:
ALEFHSVAQDLSQQLDGLLG
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.8
34.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89
0.88
0.7
88.9
28.2
Minor 5ss
44.3
-0.6
2.9
62.8
41.9
Minor BPS
69.5
0.59
1.3
74.65
36.2

Associated Gene:

Gene:
SESTD1
Ensembl Gene ID:
ENSAPLG00000002954
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003026
27844544 - 27885803
41260