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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27866817_27868733_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27866817 - 27868733
Intron Length:
1917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTAGTTTT
5'SS Class:
major
3'SS Sequence:
ATGTTTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTCTAAATG
Flanking Amino Acid:
DHMDWLNKRLVFEKFTKEST
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
81.7
32.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
75.6
0.58
0.9
74.8
39.7
Minor 5ss
42.6
-0.8
2.8
57.1
41.4
Minor BPS
68
0.43
1.7
74.4
38.6

Associated Gene:

Gene:
SESTD1
Ensembl Gene ID:
ENSAPLG00000002954
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003026
27844544 - 27885803
41260