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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27875341_27876294_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27875341 - 27876294
Intron Length:
954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATCAC
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
VVKTVVLMLQNVVPAEVSLV
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
66
0.4
1.1
69.4
35.8
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
SESTD1
Ensembl Gene ID:
ENSAPLG00000002954
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003026
27844544 - 27885803
41260