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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27944404_27945994_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27944404 - 27945994
Intron Length:
1591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
GTGTGTCCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TGGTCATTAATT
Flanking Amino Acid:
SLSQLEAHNTGSKHKTMVEA
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
62.2
0.28
1
60.3
41.5
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
70
0.71
1.6
82.09
39.3

Associated Gene:

Gene:
ZNF385B
Ensembl Gene ID:
ENSAPLG00000003705
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027771
27939863 - 28079292
139430
ENSAPLT00000003800
27939863 - 28096799
156937