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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_281563_282731_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
281563 - 282731
Intron Length:
1169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTAATC
5'SS Class:
major
3'SS Sequence:
TTCTCCACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
TTTTTCTCCACT
Flanking Amino Acid:
VLEPVILTIEEAIKHNSFFE
Intron Amino Acid Position:
711

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
72
37.9
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
80.3
0.68
0.8
74.4
29.1
Minor 5ss
37
-1.5
3.2
52.5
44.2
Minor BPS
64
0.52
2
87.74
37.8

Associated Gene:

Gene:
AOX1
Ensembl Gene ID:
ENSAPLG00000008708
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022758
264624 - 306968
42345
ENSAPLT00000018331
263911 - 307009
43099
ENSAPLT00000009339
268146 - 306968
38823
ENSAPLT00000045156
267812 - 306968
39157
ENSAPLT00000025359
264624 - 306968
42345