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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28185679_28185880_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28185679 - 28185880
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGGCC
5'SS Class:
major
3'SS Sequence:
TCTGCTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCCCAT
U12 Branch Point Sequence:
CCAGCCCCATCT
Flanking Amino Acid:
AELLLAGVDTTSNTLSWALY
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
62.8
37.8
Major BPS
46.8
-0.2
1.4
54.3
42.9
Major PPT
74.5
0.55
0.8
65.7
36
Minor 5ss
25.5
-2.8
3.4
34
41.8
Minor BPS
40.4
-0.6
2.1
53.43
47.4

Associated Gene:

Gene:
CYP27A1
Ensembl Gene ID:
ENSAPLG00000004381
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004522
28184516 - 28187628
3113