About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28188653_28188759_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28188653 - 28188759
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
GCCGTGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACACAC
U12 Branch Point Sequence:
CGCCCCGTGACG
Flanking Amino Acid:
DIIDRIAEEQVHRLVLVDEN
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
49.1
-0
0.9
56.3
29.4
Major PPT
61.6
0.26
0.9
53.5
36.7
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
45.8
-0.4
2.1
48.58
45.1

Associated Gene:

Gene:
PRKAG3
Ensembl Gene ID:
ENSAPLG00000025550
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038479
28188483 - 28191493
3011
ENSAPLT00000030088
28187544 - 28190775
3232
ENSAPLT00000020633
28188483 - 28191043
2561