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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28189645_28189776_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28189645 - 28189776
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
CCATCCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAG
U12 Branch Point Sequence:
CCAGCCACAGCC
Flanking Amino Acid:
KPLVYISPSNSLFDAVYSLI
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
46.4
-0.2
1.7
61.8
44.5
Major PPT
73
0.52
0.8
65.9
29.9
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
39.7
-0.8
2
44.22
43.4

Associated Gene:

Gene:
PRKAG3
Ensembl Gene ID:
ENSAPLG00000025550
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030088
28187544 - 28190775
3232
ENSAPLT00000020633
28188483 - 28191043
2561
ENSAPLT00000038479
28188483 - 28191493
3011