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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28190328_28190409_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28190328 - 28190409
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGTTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
ACCCCCTGACCC
Flanking Amino Acid:
KLVVFDTSLEIKKAFVALVA
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.2
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
68.2
0.41
1.1
60.8
44.7
Minor 5ss
25.6
-2.8
3
30.5
42.8
Minor BPS
48
-0.1
1.8
54.95
43

Associated Gene:

Gene:
PRKAG3
Ensembl Gene ID:
ENSAPLG00000025550
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038479
28188483 - 28191493
3011
ENSAPLT00000030088
28187544 - 28190775
3232
ENSAPLT00000020633
28188483 - 28191043
2561