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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28223640_28223955_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28223640 - 28223955
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
AACCCTTTAAAG
Flanking Amino Acid:
QCVICLYGFQEREAFTKTQC
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
82.4
0.73
0.7
76.9
25.1
Minor 5ss
35.7
-1.6
3.3
48
47.7
Minor BPS
54.4
0
1.5
53.83
40.8

Associated Gene:

Gene:
RNF25
Ensembl Gene ID:
ENSAPLG00000005028
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005203
28223374 - 28225845
2472