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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28229820_28229897_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28229820 - 28229897
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTAGG
5'SS Class:
major
3'SS Sequence:
CCTCTCTCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGCCAG
U12 Branch Point Sequence:
TCCCTGCCAGCT
Flanking Amino Acid:
REIFFNILQEARELALQQQE
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.3
65.3
46
Major BPS
40.5
-0.6
1.6
47.5
46
Major PPT
77.7
0.62
0.7
72.4
25.7
Minor 5ss
36.6
-1.5
2.5
43
43.9
Minor BPS
34
-1.1
2.3
49.59
43.9

Associated Gene:

Gene:
BCS1L
Ensembl Gene ID:
ENSAPLG00000005237
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005408
28228041 - 28230443
2403