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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28230038_28230123_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28230038 - 28230123
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGGG
5'SS Class:
major
3'SS Sequence:
CCTCTCACCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
GTCCTCTCACCC
Flanking Amino Acid:
FVPSPGNHFIWYRRKWIRIE
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
60.5
44.3
Major BPS
72.7
0.56
1
75
30.1
Major PPT
71.2
0.48
0.8
62.1
33.3
Minor 5ss
28.8
-2.4
3.5
34.5
43.8
Minor BPS
46.9
-0.2
1.8
56.33
42

Associated Gene:

Gene:
BCS1L
Ensembl Gene ID:
ENSAPLG00000005237
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005408
28228041 - 28230443
2403