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Intron Name: Anas_platyrhynchos_platyrhynchos_7_28240887_28241023_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

28240887 - 28241023

Intron Length:

137

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTGGGACAC

5'SS Class:

weak_major

3'SS Sequence:

CTCTGCCTGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTGAC

U12 Branch Point Sequence:

GGGTCCTGACAG

Flanking Amino Acid:

PGGAEPPDTAKDKESLAQAL

Intron Amino Acid Position:

340

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

54.3

0.1

1.1

46.3

37.9

Major BPS

68.9

0.47

59.2

39.1

Major PPT

69.6

0.44

36.3

Minor 5ss

28.3

-2.5

3.4

42.6

44.5

Minor BPS

45.3

-0.5

1.9

47.4

44.9

Associated Gene:

Gene:

PLCD4

Ensembl Gene ID:

ENSAPLG00000025810

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029743

28237631 - 28244819

7189