About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28241499_28241612_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28241499 - 28241612
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCCT
5'SS Class:
major
3'SS Sequence:
CTTTGCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGGGAC
U12 Branch Point Sequence:
CTGCTCGGGACA
Flanking Amino Acid:
VSTLGKYAFQTSPYPVILSL
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67
44.2
Major BPS
43.6
-0.4
1.4
36.7
42.3
Major PPT
77.9
0.63
0.8
69.4
36.9
Minor 5ss
32
-2.1
3.6
47.9
47.8
Minor BPS
42.2
-0.6
2.1
51.54
40.5

Associated Gene:

Gene:
PLCD4
Ensembl Gene ID:
ENSAPLG00000025810
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029743
28237631 - 28244819
7189