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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28242210_28242500_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28242210 - 28242500
Intron Length:
291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
CATCTGCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
GGTCTCCCATCT
Flanking Amino Acid:
LIDKYEPSETARARHALSAD
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
63
36
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
73.4
0.53
0.9
65.9
35.6
Minor 5ss
25.8
-2.8
3.1
25.9
36.5
Minor BPS
42.3
-0.5
2
60.22
42.5

Associated Gene:

Gene:
PLCD4
Ensembl Gene ID:
ENSAPLG00000025810
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029743
28237631 - 28244819
7189